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2019

Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain

Kalamakis G, Brüne D, Ravichandran S, Bolz J, Fan W, Ziebell F, Stiehl T, Catalá-Martinez F, Kupke J, Zhao S, Llorens-Bobadilla E, Bauer K, Limpert S, Berger B, Christen U, Schmezer P, Mallm JP, Berninger B, Anders S, Del Sol A, Marciniak-Czochra A, Martin-Villalba A

Cell. 2019 Feb 22;176(6):1407-1419.

doi: 10.1016/j.cell.2019.01.040

The single cell and bulk RNAseq data from this publication is deposited under: GEO: GSE115626.

Code used in the analysis is available on GitHub.

Onset of differentiation is post-transcriptionally controlled in adult neural stem cells

Baser A, Dang Y, Skabkin M, Guelcueler Balta G, Kalamakis G, Kleber S, Goepferich M, Carvajal Ibañez D, Schefzik R, Santos Lopez A, Llorens Bobadilla E, Schultz C, Fischer B, Martin-Villalba A

Nature. 2019 Jan 30;566:100-104.

doi: 10.1038/s41586-019-0888-x

The scRNAseq data from this publication is deposited under: GEO: GSE94991
Here you can take a look at the data interactively: https://martin-villalba-lab.shinyapps.io/shiny-app-avni-paper/

2016

Neurogenic Radial Glia-like Cells in Meninges Migrate and Differentiate into Functionally Integrated Neurons in the Neonatal Cortex

Bifari F *, Decimo I *, Pino A, Llorens-Bobadilla E, Zhao S, Lange C, Panuccio G, Boeckx B, Thienpont B, Vinckier S, Wyns S, Bouché A, Lambrechts D, Giugliano M, Dewerchin M, Martin-Villalba A, Carmeliet P

Cell Stem Cell. 2016 Nov 23;20(3):360–373.

doi: 10.1016/j.stem.2016.10.020

The scRNAseq data from this publication is deposited under: GEO: GSE83948
Here you can take a look at the data interactively: https://martin-villalba-lab.shinyapps.io/carmeliet_2016/

Single-Cell Analysis Uncovers Clonal Acinar Cell Heterogeneity in the Adult Pancreas

Wollny D, Zhao S, Everlien I, Lun X, Brunken J, Brüne D, Ziebell F, Tabansky I, Weichert W, Marciniak-Czochra A, Martin-Villalba A

Developmental Cell. 2016 Nov 07;39(3).

doi: 10.1016/j.devcel.2016.10.002

The scRNAseq data from this publication is deposited under: GEO: GSE80032
Here you can take a look at the data interactively: https://martin-villalba-lab.shinyapps.io/acinar_wollny_app/

2015

Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury.

Llorens-Bobadilla E, Zhao S, Baser A, Saiz-Castro G, Zwadlo K, Martin-Villalba A.

Cell Stem Cell. 2015 Sep 3;17(3):329-40. (Epub 2015 Jul 30).

doi: 10.1016/j.stem.2015.07.002.

The data from this publication is deposited under: https://github.com/Martin-Villalba-lab/Data/tree/master/CSC_2015
Here you can take a look at the data interactively: https://martin-villalba-lab.shinyapps.io/scRNAseq_CSC2015/